Transcript: GLYCTK-AS1:1

Basic information

LNCipedia transcript ID: GLYCTK-AS1:1 
HGNC Gene Symbol: GLYCTK-AS1    
HGNC Full Gene Name: GLYCTK antisense RNA 1
Ensembl Gene ID: ENSG00000242797
Ensembl Transcript ID: ENST00000467187
Location (hg19): chr3:52326746-52333083
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 643 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000467187.1; GLYCTK-AS1-003; OTTHUMT00000350826.1; NONHSAT089913
Alternative gene names: ENSG00000242797.1; GLYCTK-AS1; OTTHUMG00000158379.1; ENSG00000242797.2; ENSG00000242797.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -486.6618 non-coding 
CPAT coding probability 39.38% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
GLYCTK-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WDR82-1:1
4.0 GLYCTK-AS1:1
4.1 GLYCTK-AS1:1
5.0 GLYCTK-AS1:1
5.1 GLYCTK-AS1:1
5.2 GLYCTK-AS1:1