Transcript: GMDS-DT:113

Basic information

LNCipedia transcript ID: GMDS-DT:113 
HGNC Gene Symbol: GMDS-DT    
HGNC Full Gene Name: GMDS divergent transcript
Ensembl Gene ID: ENSG00000250903
Ensembl Transcript ID: ENST00000534160
Location (hg19): chr6:2306527-2352936
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 720 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000534160; ENST00000534160.1; RP1-80B9.2-014; OTTHUMT00000389404.1; NONHSAT106642
Alternative gene names: ENSG00000250903; RP1-80B9.2; ENSG00000250903.2; OTTHUMG00000014120.3; ENSG00000250903.4; GMDS-AS1; ENSG00000250903.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.1543 non-coding 
CPAT coding probability 28.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GMDS-DT:113 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WRNIP1-2:22
3.1 lnc-WRNIP1-2:22
4.0 GMDS-AS1:26
4.1 GMDS-AS1:26
5.0 GMDS-AS1:26
5.1 GMDS-DT:43
5.2 GMDS-DT:113