Transcript: GMDS-DT:130

Basic information

LNCipedia transcript ID: GMDS-DT:130 
HGNC Gene Symbol: GMDS-DT    
HGNC Full Gene Name: GMDS divergent transcript
Ensembl Gene ID: ENSG00000250903
Ensembl Transcript ID: ENST00000532564
Location (hg19): chr6:2398811-2413782
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1436 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000532564.2; ENST00000532564.6
Alternative gene names: ENSG00000250903.4; GMDS-AS1; ENSG00000250903.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.9097 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GMDS-DT:130 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WRNIP1-2:41
4.0 GMDS-AS1:37
4.1 GMDS-AS1:37
5.0 GMDS-AS1:37
5.1 GMDS-DT:60
5.2 GMDS-DT:130