Transcript: GNG12-AS1:5

Basic information

LNCipedia transcript ID: GNG12-AS1:5 
HGNC Gene Symbol: GNG12-AS1    
HGNC Full Gene Name: GNG12 antisense RNA 1
Ensembl Gene ID: ENSG00000232284
Ensembl Transcript ID: ENST00000414904
Location (hg19): chr1:68421088-68492445
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 796 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414904; ENST00000414904.1; GNG12-AS1-003; OTTHUMT00000025356.1; NONHSAT003812
Alternative gene names: ENSG00000232284; RP11-518D3.1; ENSG00000232284.2; GNG12-AS1; OTTHUMG00000009150.1; ENSG00000232284.3; ENSG00000232284.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.5476 non-coding 
CPAT coding probability 3.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GNG12-AS1:5 no no no no

Available literature

  1. Stojic (2016), Transcriptional silencing of long noncoding RNA GNG12-AS1 uncouples its transcriptional and product-related functions., Nat Commun
  2. Niemczyk (2013), Imprinted chromatin around DIRAS3 regulates alternative splicing of GNG12-AS1, a long noncoding RNA., Am. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GADD45A-1:4
3.1 lnc-GADD45A-1:4
4.0 GNG12-AS1:5
4.1 GNG12-AS1:5
5.0 GNG12-AS1:5
5.1 GNG12-AS1:5
5.2 GNG12-AS1:5