Transcript: GNG12-AS1:6

Basic information

LNCipedia transcript ID: GNG12-AS1:6 
LNCipedia gene ID: GNG12-AS1
Location (hg19): chr1:68421109-68441255
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 658 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00000973; NONHSAT003813
Alternative gene names: XLOC_000238; linc-LRRC7-5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.5476 non-coding 
CPAT coding probability 3.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GNG12-AS1:6 no no no no

Available literature

  1. Stojic (2016), Transcriptional silencing of long noncoding RNA GNG12-AS1 uncouples its transcriptional and product-related functions., Nat Commun
  2. Niemczyk (2013), Imprinted chromatin around DIRAS3 regulates alternative splicing of GNG12-AS1, a long noncoding RNA., Am. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GADD45A-1:5
3.1 lnc-GADD45A-1:5
4.0 GNG12-AS1:6
4.1 GNG12-AS1:6
5.0 GNG12-AS1:6
5.1 GNG12-AS1:6
5.2 GNG12-AS1:6