Transcript: GPC6-AS1:1

Basic information

LNCipedia transcript ID: GPC6-AS1:1 
LNCipedia gene ID: GPC6-AS1
Location (hg19): chr13:94806447-94840245
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 650 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000436329.1; GPC6-AS1-001; OTTHUMT00000045459.1; NONHSAT034721
Alternative gene names: ENSG00000236520.1; GPC6-AS1; OTTHUMG00000017204.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -151.0921 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GPC6-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DCT-2:1
4.0 GPC6-AS1:1
4.1 GPC6-AS1:1
5.0 GPC6-AS1:1
5.1 GPC6-AS1:1
5.2 GPC6-AS1:1