Transcript: GPC6-AS2:1

Basic information

LNCipedia transcript ID: GPC6-AS2:1 
LNCipedia gene ID: GPC6-AS2
RefSeq ID: NR_046536
Location (hg19): chr13:94470677-94510726
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 651 bp
Exons: 7
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT034714; NR_046536; NR_046536.1
Alternative gene names: ; GPC6-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -168.5525 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GPC6-AS2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DCT-3:2
4.0 GPC6-AS2:1
4.1 GPC6-AS2:1
5.0 GPC6-AS2:1
5.1 GPC6-AS2:1
5.2 GPC6-AS2:1