Transcript: GSEC:11

Basic information

LNCipedia transcript ID: GSEC:11 
HGNC Gene Symbol: GSEC    
HGNC Full Gene Name: G-quadruplex forming sequence containing lncRNA
Ensembl Gene ID: ENSG00000280832
Ensembl Transcript ID: ENST00000629441
Location (hg19): chr11:126210784-126225474
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1572 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000629441.1
Alternative gene names: ENSG00000280832.1; ST3GAL4-AS1; GSEC


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -28.1544 non-coding 
CPAT coding probability 6.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GSEC:11 yes no no no

Available literature

  1. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-712L6.5.1-2:5
4.1 lnc-RP11-712L6.5.1-2:5
5.0 lnc-RP11-712L6.5.1-2:5
5.1 GSEC:6
5.2 GSEC:11