Transcript: GSEC:8

Basic information

LNCipedia transcript ID: GSEC:8 
HGNC Gene Symbol: GSEC    
HGNC Full Gene Name: G-quadruplex forming sequence containing lncRNA
Ensembl Gene ID: ENSG00000280832
Ensembl Transcript ID: ENST00000626810
Location (hg19): chr11:126220067-126225482
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2289 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499602; NONHSAT025025; ENST00000626810.1
Alternative gene names: ENSG00000247445; AP001318.3; ENSG00000280832.1; ST3GAL4-AS1; GSEC


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.6552 non-coding 
CPAT coding probability 29.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GSEC:8 no no no no

Available literature

  1. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-712L6.5.1-1:1
3.1 lnc-RP11-712L6.5.1-2:1
4.0 lnc-RP11-712L6.5.1-2:1
4.1 lnc-RP11-712L6.5.1-2:1
5.0 lnc-RP11-712L6.5.1-2:1
5.1 GSEC:2
5.2 GSEC:8