Transcript: GSEC:9

Basic information

LNCipedia transcript ID: GSEC:9 
LNCipedia gene ID: GSEC
Location (hg19): chr11:126210853-126225482
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1511 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT025023
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.1544 non-coding 
CPAT coding probability 6.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GSEC:9 yes no no no

Available literature

  1. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-712L6.5.1-2:4
4.0 lnc-RP11-712L6.5.1-2:4
4.1 lnc-RP11-712L6.5.1-2:4
5.0 lnc-RP11-712L6.5.1-2:4
5.1 GSEC:3
5.2 GSEC:9