Transcript: GTSE1-DT:4

Basic information

LNCipedia transcript ID: GTSE1-DT:4 
HGNC Gene Symbol: GTSE1-DT    
HGNC Full Gene Name: GTSE1 divergent transcript
Ensembl Gene ID: ENSG00000277232
Ensembl Transcript ID: ENST00000623117
RefSeq ID: NR_024009
Location (hg19): chr22:46691040-46692557
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1518 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT087310; NR_024009; ENST00000623117.1; NR_024009.1
Alternative gene names: ENSG00000277232.2; GTSE1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.08 non-coding 
CPAT coding probability 13.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GTSE1-DT:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PKDREJ-2:1
4.0 lnc-PKDREJ-2:1
4.1 lnc-PKDREJ-2:1
5.0 lnc-PKDREJ-2:1
5.1 GTSE1-DT:2
5.2 GTSE1-DT:4