Transcript: HAR1B:7

Basic information

LNCipedia transcript ID: HAR1B:7 
LNCipedia gene ID: HAR1B
Location (hg19): chr20:61722336-61733974
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3783 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000231133.2|MICT00000222187.1
Alternative gene names: HAR1R; NCRNA00065; LINC00065


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 16.5539 non-coding 
CPAT coding probability 8.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HAR1B:7 no no no no

Available literature

  1. Takahashi (2014), Extracellular vesicle-mediated transfer of long non-coding RNA ROR modulates chemosensitivity in human hepatocellular cancer., FEBS Open Bio
  2. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  3. Johnson (2010), Human accelerated region 1 noncoding RNA is repressed by REST in Huntington's disease., Physiol. Genomics
  4. Beniaminov (2008), Distinctive structures between chimpanzee and human in a brain noncoding RNA., RNA
  5. Pollard (2006), An RNA gene expressed during cortical development evolved rapidly in humans., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 HAR1B:7
5.0 HAR1B:7
5.1 HAR1B:7
5.2 HAR1B:7