Transcript: HAS2-AS1:3

Basic information

LNCipedia transcript ID: HAS2-AS1:3 
LNCipedia gene ID: HAS2-AS1
Location (hg19): chr8:122651586-122657564
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2287 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT128466; NR_002835
Alternative gene names: HASNT; NCRNA00077


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.6011 non-coding 
CPAT coding probability 1.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HAS2-AS1:3 no no no no

Available literature

  1. Zhu (2017), Long noncoding RNA HAS2-AS1 mediates hypoxia-induced invasiveness of oral squamous cell carcinoma., Mol. Carcinog.
  2. Joo (2014), Role of Pnn in alternative splicing of a specific subset of lncRNAs of the corneal epithelium., Mol. Vis.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-785H20.1.1-2:5
4.0 HAS2-AS1:3
4.1 HAS2-AS1:3
5.0 HAS2-AS1:3
5.1 HAS2-AS1:3
5.2 HAS2-AS1:3