Transcript: HAS2-AS1:7

Basic information

LNCipedia transcript ID: HAS2-AS1:7 
LNCipedia gene ID: HAS2-AS1
Location (hg19): chr8:122655559-122657660
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1743 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT128471; FPKM1_group_32083_transcript_1
Alternative gene names: HASNT; NCRNA00077


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.6011 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HAS2-AS1:7 no no no no

Available literature

  1. Zhu (2017), Long noncoding RNA HAS2-AS1 mediates hypoxia-induced invasiveness of oral squamous cell carcinoma., Mol. Carcinog.
  2. Joo (2014), Role of Pnn in alternative splicing of a specific subset of lncRNAs of the corneal epithelium., Mol. Vis.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-785H20.1.1-2:7
4.0 HAS2-AS1:7
4.1 HAS2-AS1:7
5.0 HAS2-AS1:7
5.1 HAS2-AS1:7
5.2 HAS2-AS1:7