Transcript: HCG24:3

Basic information

LNCipedia transcript ID: HCG24:3 
HGNC Gene Symbol: HCG24    
HGNC Full Gene Name: HLA complex group 24
Ensembl Gene ID: ENSG00000230313
Ensembl Transcript ID: ENST00000414398
Location (hg19): chr6:33112560-33115544
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 717 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011294; ENST00000414398.1; HCG24-001; OTTHUMT00000076308.2; NONHSAT108972
Alternative gene names: XLOC_005260; linc-SLC39A7; ENSG00000230313.1; HCG24; OTTHUMG00000031166.2; dJ1033B10.15


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.6604 non-coding 
CPAT coding probability 20.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCG24:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC39A7-1:1
3.1 lnc-SLC39A7-2:1
4.0 HCG24:3
4.1 HCG24:3
5.0 HCG24:3
5.1 HCG24:3
5.2 HCG24:3