Transcript: HCG26:2

Basic information

LNCipedia transcript ID: HCG26:2 
HGNC Gene Symbol: HCG26    
HGNC Full Gene Name: HLA complex group 26
RefSeq ID: NR_002812
Location (hg19): chr6:31439006-31440185
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1180 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT108776; NR_002812; NR_002812.3
Alternative gene names: bPG181B23.4; bCX205D4.4; NCRNA00191; HCG26


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.3188 non-coding 
CPAT coding probability 21.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCG26:2 no no no no

Available literature

  1. Xu (2014), Histone acetyltransferase inhibitor II induces apoptosis in glioma cell lines via the p53 signaling pathway., J. Exp. Clin. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MICB-1:2
4.0 HCG26:2
4.1 HCG26:2
5.0 HCG26:2
5.1 HCG26:2
5.2 HCG26:2