Transcript: HCG27:5

Basic information

LNCipedia transcript ID: HCG27:5 
LNCipedia gene ID: HCG27
Location (hg19): chr6:31169790-31170778
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 671 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: TCONS_00011288; ENST00000415276; NONHSAT108742
Alternative gene names: XLOC_005244; linc-MICA-2; ENSG00000206344; HCG27; bPG299F13.9; bCX101P6.9; bQB115I13.2; FLJ40123


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.4187 non-coding 
CPAT coding probability 5.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCG27:5 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCF19-1:5
3.1 lnc-TCF19-1:5
4.0 HCG27:5
4.1 HCG27:5
5.0 HCG27:5
5.1 HCG27:5
5.2 HCG27:5