Transcript: HDHD5-AS1:14

Basic information

LNCipedia transcript ID: HDHD5-AS1:14 
LNCipedia gene ID: HDHD5-AS1
Location (hg19): chr22:17640247-17642126
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1880 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000185837.3|HBMT00000936436.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -22.6616 non-coding 
CPAT coding probability 17.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HDHD5-AS1:14 no no no no

Available literature

  1. Footz (2001), Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CECR5-AS1:7
5.0 CECR5-AS1:7
5.1 HDHD5-AS1:2
5.2 HDHD5-AS1:14