Transcript: HDHD5-AS1:20

Basic information

LNCipedia transcript ID: HDHD5-AS1:20 
LNCipedia gene ID: HDHD5-AS1
Location (hg19): chr22:17640264-17646284
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 227 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT083197
Alternative gene names: NCRNA00017


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 4.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HDHD5-AS1:20 no no no no

Available literature

  1. Footz (2001), Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC006946.15.1-1:4
4.0 CECR5-AS1:2
4.1 CECR5-AS1:2
5.0 CECR5-AS1:2
5.1 HDHD5-AS1:9
5.2 HDHD5-AS1:20