Transcript: HDHD5-AS1:21

Basic information

LNCipedia transcript ID: HDHD5-AS1:21 
HGNC Gene Symbol: HDHD5-AS1    
HGNC Full Gene Name: HDHD5 antisense RNA 1
Ensembl Gene ID: ENSG00000185837
Ensembl Transcript ID: ENST00000329743
Location (hg19): chr22:17640274-17646329
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 339 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000329743.3; CECR5-AS1-002; OTTHUMT00000316107.1
Alternative gene names: ENSG00000185837.3; CECR5-AS1; OTTHUMG00000150096.2; NCRNA00017; HDHD5-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -316.3468 non-coding 
CPAT coding probability 51.50% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HDHD5-AS1:21 no no no no

Available literature

  1. Footz (2001), Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC006946.15.1-1:1
4.0 CECR5-AS1:3
4.1 CECR5-AS1:3
5.0 CECR5-AS1:3
5.1 HDHD5-AS1:10
5.2 HDHD5-AS1:21