Transcript: HDHD5-AS1:23

Basic information

LNCipedia transcript ID: HDHD5-AS1:23 
LNCipedia gene ID: HDHD5-AS1
RefSeq ID: NR_024482
Location (hg19): chr22:17640279-17646335
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 340 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_024482; NR_024482.1
Alternative gene names: NCRNA00017; CECR5-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -316.3468 non-coding 
CPAT coding probability 51.50% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HDHD5-AS1:23 no no no no

Available literature

  1. Footz (2001), Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC006946.15.1-1:6
4.0 CECR5-AS1:5
4.1 CECR5-AS1:5
5.0 CECR5-AS1:5
5.1 HDHD5-AS1:12
5.2 HDHD5-AS1:23