Transcript: HEXDC-IT1:3

Basic information

LNCipedia transcript ID: HEXDC-IT1:3 
HGNC Gene Symbol: HEXDC-IT1    
HGNC Full Gene Name: HEXDC intronic transcript 1
Ensembl Gene ID: ENSG00000279066
Ensembl Transcript ID: ENST00000624980
Location (hg19): chr17:80383374-80385186
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1813 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000624980.1
Alternative gene names: ENSG00000279066.1; HEXDC-IT1; AC132938.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 23.4501 non-coding 
CPAT coding probability 43.48% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HEXDC-IT1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-NARF-7:1
4.1 lnc-NARF-7:1
5.0 lnc-NARF-7:1
5.1 HEXDC-IT1:2
5.2 HEXDC-IT1:3