Transcript: HHIP-AS1:6

Basic information

LNCipedia transcript ID: HHIP-AS1:6 
LNCipedia gene ID: HHIP-AS1
Location (hg19): chr4:145567337-145568356
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 967 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000248890.1|ENCT00000337274.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 0.7118 non-coding 
CPAT coding probability 1.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HHIP-AS1:6 no no no no

Available literature

  1. Dong (2014), Comparison of long noncoding RNA and mRNA expression profiles in mesenchymal stem cells derived from human periodontal ligament and bone marrow., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 HHIP-AS1:6
5.0 HHIP-AS1:6
5.1 HHIP-AS1:6
5.2 HHIP-AS1:6