Transcript: HIPK1-AS1:3

Basic information

LNCipedia transcript ID: HIPK1-AS1:3 
HGNC Gene Symbol: HIPK1-AS1    
HGNC Full Gene Name: HIPK1 antisense RNA 1
Ensembl Gene ID: ENSG00000235527
Ensembl Transcript ID: ENST00000441071
Location (hg19): chr1:114466622-114471940
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 571 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000441071; ENST00000441071.1; RP5-1073O3.7-003; OTTHUMT00000033125.1; NONHSAT005345; ENST00000441071.5
Alternative gene names: ENSG00000235527; RP5-1073O3.7; ENSG00000235527.2; OTTHUMG00000011982.2; ENSG00000235527.6; HIPK1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.1861 non-coding 
CPAT coding probability 3.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HIPK1-AS1:3 no no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AP4B1-1:2
3.1 lnc-AP4B1-1:2
4.0 HIPK1-AS1:3
4.1 HIPK1-AS1:3
5.0 HIPK1-AS1:3
5.1 HIPK1-AS1:3
5.2 HIPK1-AS1:3