Transcript: HIPK1-AS1:4

Basic information

LNCipedia transcript ID: HIPK1-AS1:4 
HGNC Gene Symbol: HIPK1-AS1    
HGNC Full Gene Name: HIPK1 antisense RNA 1
Ensembl Gene ID: ENSG00000235527
Ensembl Transcript ID: ENST00000450706
RefSeq ID: NR_110725
Location (hg19): chr1:114466623-114471880
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2117 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000450706; ENST00000450706.1; RP5-1073O3.7-001; OTTHUMT00000033123.1; NONHSAT005346; NR_110725; NR_110725.1
Alternative gene names: ENSG00000235527; RP5-1073O3.7; ENSG00000235527.2; OTTHUMG00000011982.2; ENSG00000235527.6; HIPK1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.2998 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HIPK1-AS1:4 no no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AP4B1-1:3
3.1 lnc-AP4B1-1:3
4.0 HIPK1-AS1:4
4.1 HIPK1-AS1:4
5.0 HIPK1-AS1:4
5.1 HIPK1-AS1:4
5.2 HIPK1-AS1:4