Transcript: HLA-DQB1-AS1:1

Basic information

LNCipedia transcript ID: HLA-DQB1-AS1:1 
HGNC Gene Symbol: HLA-DQB1-AS1    
HGNC Full Gene Name: HLA-DQB1 antisense RNA 1
Ensembl Gene ID: ENSG00000223534
Ensembl Transcript ID: ENST00000419852
RefSeq ID: NR_133907
Location (hg19): chr6:32627657-32628506
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 552 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000419852.1; HLA-DQB1-AS1-001; OTTHUMT00000276136.1; NONHSAT108921; NR_133907.1
Alternative gene names: ENSG00000223534.1; HLA-DQB1-AS1; OTTHUMG00000140101.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.9718 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HLA-DQB1-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HLA-DQA1-5:1
4.0 HLA-DQB1-AS1:1
4.1 HLA-DQB1-AS1:1
5.0 HLA-DQB1-AS1:1
5.1 HLA-DQB1-AS1:1
5.2 HLA-DQB1-AS1:1