Transcript: HLA-F-AS1:7

Basic information

LNCipedia transcript ID: HLA-F-AS1:7 
LNCipedia gene ID: HLA-F-AS1
Location (hg19): chr6:29706564-29706831
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 268 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr6_2271_-
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.5768 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HLA-F-AS1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZFP57-7:6
4.0 HLA-F-AS1:7
4.1 HLA-F-AS1:7
5.0 HLA-F-AS1:7
5.1 HLA-F-AS1:7
5.2 HLA-F-AS1:7