Transcript: HNF4A-AS1:12

Basic information

LNCipedia transcript ID: HNF4A-AS1:12 
LNCipedia gene ID: HNF4A-AS1
Location (hg19): chr20:42985322-42987684
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2363 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT079868
Alternative gene names: uc002xlx


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.9257 non-coding 
CPAT coding probability 2.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HNF4A-AS1:12 yes no no no

Available literature

  1. Nielsen (2014), Identification of expressed and conserved human noncoding RNAs., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf62-3:11
4.0 HNF4A-AS1:12
4.1 HNF4A-AS1:12
5.0 HNF4A-AS1:12
5.1 HNF4A-AS1:12
5.2 HNF4A-AS1:12