Transcript: HNF4A-AS1:7

Basic information

LNCipedia transcript ID: HNF4A-AS1:7 
LNCipedia gene ID: HNF4A-AS1
Location (hg19): chr20:42987310-43020690
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2444 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT079869
Alternative gene names: uc002xlx


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.7245 non-coding 
CPAT coding probability 9.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HNF4A-AS1:7 yes no no no

Available literature

  1. Nielsen (2014), Identification of expressed and conserved human noncoding RNAs., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf62-3:7
4.0 HNF4A-AS1:7
4.1 HNF4A-AS1:7
5.0 HNF4A-AS1:7
5.1 HNF4A-AS1:7
5.2 HNF4A-AS1:7