Transcript: HNF4A-AS1:8

Basic information

LNCipedia transcript ID: HNF4A-AS1:8 
LNCipedia gene ID: HNF4A-AS1
Ensembl Gene ID: ENSG00000233376
Ensembl Transcript ID: ENST00000455642
Location (hg19): chr20:43018264-43020177
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 403 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455642; ENST00000455642.1; RP5-881L22.6-001; OTTHUMT00000079348.1; NONHSAT079874
Alternative gene names: ENSG00000233376; RP5-881L22.6; ENSG00000233376.1; OTTHUMG00000032527.1; uc002xlx; AL117382.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -415.1576 non-coding 
CPAT coding probability 10.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HNF4A-AS1:8 yes no no no

Available literature

  1. Nielsen (2014), Identification of expressed and conserved human noncoding RNAs., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf62-2:1
3.1 lnc-C20orf62-2:1
4.0 HNF4A-AS1:8
4.1 HNF4A-AS1:8
5.0 HNF4A-AS1:8
5.1 HNF4A-AS1:8
5.2 HNF4A-AS1:8