Transcript: HOXC-AS1:3

Basic information

LNCipedia transcript ID: HOXC-AS1:3 
LNCipedia gene ID: HOXC-AS1
Location (hg19): chr12:54392806-54393782
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 536 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000250451.1|ENST00000505700.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -69.4157 non-coding 
CPAT coding probability 0.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HOXC-AS1:3 no no no no

Available literature

  1. Huang (2016), Long Noncoding RNA HOXC-AS1 Suppresses Ox-LDL-Induced Cholesterol Accumulation Through Promoting HOXC6 Expression in THP-1 Macrophages., DNA Cell Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 HOXC-AS1:3
5.0 HOXC-AS1:3
5.1 HOXC-AS1:3
5.2 HOXC-AS1:3