Transcript: HOXD-AS2:1

Basic information

LNCipedia transcript ID: HOXD-AS2:1 
HGNC Gene Symbol: HOXD-AS2    
HGNC Full Gene Name: HOXD cluster antisense RNA 2
Ensembl Gene ID: ENSG00000237380
Ensembl Transcript ID: ENST00000426965
Location (hg19): chr2:176999334-177001826
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 927 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426965.1; HOXD-AS2-002; OTTHUMT00000334240.1; NONHSAT075630
Alternative gene names: ENSG00000237380.2; HOXD-AS2; OTTHUMG00000154174.3; ENSG00000237380.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -151.2861 non-coding 
CPAT coding probability 12.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HOXD-AS2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC009336.1-1:1
4.0 HOXD-AS2:1
4.1 HOXD-AS2:1
5.0 HOXD-AS2:1
5.1 HOXD-AS2:1
5.2 HOXD-AS2:1