Transcript: HPYR1:1

Basic information

LNCipedia transcript ID: HPYR1:1 
HGNC Gene Symbol: HPYR1    
HGNC Full Gene Name: Helicobacter pylori responsive 1
Ensembl Gene ID: ENSG00000253521
Ensembl Transcript ID: ENST00000520457
RefSeq ID: NR_026684
Location (hg19): chr8:133572745-133573726
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 982 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000520457; ENST00000520457.1; HPYR1-001; OTTHUMT00000379577.1; NONHSAT129185; NR_026684; NR_026684.1
Alternative gene names: ENSG00000253521; HPYR1; ENSG00000253521.1; OTTHUMG00000164645.1; HPRG1; NCRNA00027; LINC00027


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.544 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HPYR1:1 no no no no

Available literature

  1. Cox (2001), cDNA array analysis of cag pathogenicity island-associated Helicobacter pylori epithelial cell response genes., Infect. Immun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRC6-1:1
3.1 lnc-LRRC6-1:1
4.0 HPYR1:1
4.1 HPYR1:1
5.0 HPYR1:1
5.1 HPYR1:1
5.2 HPYR1:1