Transcript: HTT-AS:2

Basic information

LNCipedia transcript ID: HTT-AS:2 
LNCipedia gene ID: HTT-AS
RefSeq ID: NR_045414
Location (hg19): chr4:3064973-3076241
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 740 bp
Exons: 3
Sources: NONCODE v4; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT094847; NR_045414; NR_045414.1
Alternative gene names: HTTAS; HTT-AS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.4371 non-coding 
CPAT coding probability 1.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HTT-AS:2 no no no no

Available literature

  1. Wu (2013), Roles of long noncoding RNAs in brain development, functional diversification and neurodegenerative diseases., Brain Res. Bull.
  2. Chung (2011), A natural antisense transcript at the Huntington's disease repeat locus regulates HTT expression., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NOP14-2:2
4.0 HTT-AS:2
4.1 HTT-AS:2
5.0 HTT-AS:2
5.1 HTT-AS:2
5.2 HTT-AS:2