Transcript: IGSF21-AS1:5

Basic information

LNCipedia transcript ID: IGSF21-AS1:5 
LNCipedia gene ID: IGSF21-AS1
Location (hg19): chr1:18493423-18505840
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 433 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000419667.1; RP11-174G17-001; OTTHUMT00000006929.1; NONHSAT001261
Alternative gene names: ENSG00000230035.1; RP11-174G17; OTTHUMG00000002434.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.7652 non-coding 
CPAT coding probability 2.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
IGSF21-AS1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TAS1R2-1:1
4.0 lnc-TAS1R2-1:1
4.1 lnc-TAS1R2-1:1
5.0 lnc-TAS1R2-1:1
5.1 IGSF21-AS1:2
5.2 IGSF21-AS1:5