Transcript: IL21R-AS1:2

Basic information

LNCipedia transcript ID: IL21R-AS1:2 
HGNC Gene Symbol: IL21R-AS1    
HGNC Full Gene Name: IL21R antisense RNA 1
Ensembl Gene ID: ENSG00000259954
Ensembl Transcript ID: ENST00000563191
RefSeq ID: NR_037158
Location (hg19): chr16:27458990-27464714
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2615 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000563191.1; AC002303.5-001; OTTHUMT00000433868.1; NONHSAT141453; NR_037158.1
Alternative gene names: ENSG00000259954.1; AC002303.5; OTTHUMG00000176806.1; IL21R-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.2335 non-coding 
CPAT coding probability 3.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
IL21R-AS1:2 no no no no

Available literature

  1. Cai (2016), Circulating 'lncRNA OTTHUMT00000387022' from monocytes as a novel biomarker for coronary artery disease., Cardiovasc. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GTF3C1-1:1
4.0 IL21R-AS1:2
4.1 IL21R-AS1:2
5.0 IL21R-AS1:2
5.1 IL21R-AS1:2
5.2 IL21R-AS1:2