Transcript: ILF3-DT:17

Basic information

LNCipedia transcript ID: ILF3-DT:17 
LNCipedia gene ID: ILF3-DT
Location (hg19): chr19:10762550-10764550
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1551 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00027184; NONHSAT061082
Alternative gene names: XLOC_013222; linc-AP1M2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 26.9796 non-coding 
CPAT coding probability 5.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ILF3-DT:17 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AP1M2-1:3
3.1 lnc-AP1M2-1:3
4.0 ILF3-AS1:5
4.1 ILF3-AS1:5
5.0 ILF3-AS1:5
5.1 ILF3-DT:6
5.2 ILF3-DT:17