Transcript: IPO9-AS1:2

Basic information

LNCipedia transcript ID: IPO9-AS1:2 
LNCipedia gene ID: IPO9-AS1
RefSeq ID: NR_046696
Location (hg19): chr1:201657384-201798687
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 842 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_046696; NR_046696.1
Alternative gene names: ; IPO9-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.5023 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
IPO9-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LMOD1-3:4
4.0 IPO9-AS1:2
4.1 IPO9-AS1:2
5.0 IPO9-AS1:2
5.1 IPO9-AS1:2
5.2 IPO9-AS1:2