Transcript: IQCJ-SCHIP1-AS1:3

Basic information

LNCipedia transcript ID: IQCJ-SCHIP1-AS1:3 
LNCipedia gene ID: IQCJ-SCHIP1-AS1
RefSeq ID: NR_121669
Location (hg19): chr3:159483171-159486401
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 597 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_121669; NR_121669.1
Alternative gene names: ; IQCJ-SCHIP1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -188.9432 non-coding 
CPAT coding probability 2.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
IQCJ-SCHIP1-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-432B6.3.1-2:4
4.0 IQCJ-SCHIP1-AS1:3
4.1 IQCJ-SCHIP1-AS1:3
5.0 IQCJ-SCHIP1-AS1:3
5.1 IQCJ-SCHIP1-AS1:3
5.2 IQCJ-SCHIP1-AS1:3