Transcript: ISM1-AS1:1

Basic information

LNCipedia transcript ID: ISM1-AS1:1 
LNCipedia gene ID: ISM1-AS1
RefSeq ID: NR_040043
Location (hg19): chr20:13218067-13220334
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1046 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT078683; NR_040043; NR_040043.1
Alternative gene names: ; ISM1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.6586 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ISM1-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TASP1-2:2
4.0 ISM1-AS1:1
4.1 ISM1-AS1:1
5.0 ISM1-AS1:1
5.1 ISM1-AS1:1
5.2 ISM1-AS1:1