Transcript: ITGA9-AS1:2

Basic information

LNCipedia transcript ID: ITGA9-AS1:2 
LNCipedia gene ID: ITGA9-AS1
RefSeq ID: NR_110531
Location (hg19): chr3:37795180-37903271
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 620 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110531; NR_110531.1
Alternative gene names: ; ITGA9-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -340.1153 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ITGA9-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLCD1-1:12
4.0 ITGA9-AS1:2
4.1 ITGA9-AS1:2
5.0 ITGA9-AS1:2
5.1 ITGA9-AS1:2
5.2 ITGA9-AS1:2