Transcript: ITGA9-AS1:4

Basic information

LNCipedia transcript ID: ITGA9-AS1:4 
HGNC Gene Symbol: ITGA9-AS1    
HGNC Full Gene Name: ITGA9 antisense RNA 1
Ensembl Gene ID: ENSG00000235257
Ensembl Transcript ID: ENST00000457661
Location (hg19): chr3:37849959-37903271
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 738 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457661.5
Alternative gene names: ENSG00000235257.8; ITGA9-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -51.2051 non-coding 
CPAT coding probability 3.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ITGA9-AS1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 ITGA9-AS1:4
4.1 ITGA9-AS1:4
5.0 ITGA9-AS1:4
5.1 ITGA9-AS1:4
5.2 ITGA9-AS1:4