Transcript: ITGA9-AS1:5

Basic information

LNCipedia transcript ID: ITGA9-AS1:5 
HGNC Gene Symbol: ITGA9-AS1    
HGNC Full Gene Name: ITGA9 antisense RNA 1
Ensembl Gene ID: ENSG00000235257
Ensembl Transcript ID: ENST00000420870
Location (hg19): chr3:37832356-37903265
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 581 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420870; ENST00000420870.1; AC093415.2-005; OTTHUMT00000342354.1; NONHSAT089024; ENST00000420870.5
Alternative gene names: ENSG00000235257; AC093415.2; ENSG00000235257.2; OTTHUMG00000155924.1; ENSG00000235257.4; ENSG00000235257.8; ITGA9-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -187.0684 non-coding 
CPAT coding probability 12.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ITGA9-AS1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLCD1-1:2
3.1 lnc-PLCD1-1:2
4.0 ITGA9-AS1:5
4.1 ITGA9-AS1:5
5.0 ITGA9-AS1:5
5.1 ITGA9-AS1:5
5.2 ITGA9-AS1:5