Transcript: ITGB1-DT:29

Basic information

LNCipedia transcript ID: ITGB1-DT:29 
LNCipedia gene ID: ITGB1-DT
Location (hg19): chr10:33247400-33255135
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 7353 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000229656.2|ENCT00000044915.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 0.9949 non-coding 
CPAT coding probability 1.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ITGB1-DT:29 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C10orf68-1:9
5.0 lnc-C10orf68-1:9
5.1 ITGB1-DT:6
5.2 ITGB1-DT:29