Transcript: ITGB1-DT:32

Basic information

LNCipedia transcript ID: ITGB1-DT:32 
HGNC Gene Symbol: ITGB1-DT    
HGNC Full Gene Name: ITGB1 divergent transcript
Ensembl Gene ID: ENSG00000229656
Ensembl Transcript ID: ENST00000450890
Location (hg19): chr10:33247773-33371030
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1048 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000450890; ENST00000450890.1; RP11-462L8.1-001; OTTHUMT00000047511.1; NONHSAT012666; ENST00000450890.5
Alternative gene names: ENSG00000229656; RP11-462L8.1; ENSG00000229656.2; OTTHUMG00000017934.1; ENSG00000229656.6; AL365203.1; ITGB1-DT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.774 non-coding 
CPAT coding probability 2.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ITGB1-DT:32 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf68-1:1
3.1 lnc-C10orf68-1:1
4.0 lnc-C10orf68-1:1
4.1 lnc-C10orf68-1:1
5.0 lnc-C10orf68-1:1
5.1 ITGB1-DT:9
5.2 ITGB1-DT:32