Transcript: ITGB1-DT:41

Basic information

LNCipedia transcript ID: ITGB1-DT:41 
HGNC Gene Symbol: ITGB1-DT    
HGNC Full Gene Name: ITGB1 divergent transcript
Ensembl Gene ID: ENSG00000229656
Ensembl Transcript ID: ENST00000414157
Location (hg19): chr10:33271469-33371030
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1041 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414157; ENST00000414157.1; RP11-462L8.1-002; OTTHUMT00000047512.1; NONHSAT012668
Alternative gene names: ENSG00000229656; RP11-462L8.1; ENSG00000229656.2; OTTHUMG00000017934.1; ENSG00000229656.6; AL365203.1; ITGB1-DT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.9022 non-coding 
CPAT coding probability 2.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ITGB1-DT:41 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf68-1:2
3.1 lnc-C10orf68-1:2
4.0 lnc-C10orf68-1:2
4.1 lnc-C10orf68-1:2
5.0 lnc-C10orf68-1:2
5.1 ITGB1-DT:18
5.2 ITGB1-DT:41