Transcript: ITGB2-AS1:2

Basic information

LNCipedia transcript ID: ITGB2-AS1:2 
LNCipedia gene ID: ITGB2-AS1
RefSeq ID: NR_038312
Location (hg19): chr21:46340950-46349595
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2352 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT082896; NR_038312; NR_038312.1
Alternative gene names: ; ITGB2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.228 non-coding 
CPAT coding probability 70.10% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
ITGB2-AS1:2 yes no no no

Available literature

  1. Cogill (2014), Co-expression Network Analysis of Human lncRNAs and Cancer Genes., Cancer Inform


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM207A-1:4
4.0 ITGB2-AS1:2
4.1 ITGB2-AS1:2
5.0 ITGB2-AS1:2
5.1 ITGB2-AS1:2
5.2 ITGB2-AS1:2