Transcript: ITGB5-AS1:1

Basic information

LNCipedia transcript ID: ITGB5-AS1:1 
HGNC Gene Symbol: ITGB5-AS1    
HGNC Full Gene Name: ITGB5 antisense RNA 1
Ensembl Gene ID: ENSG00000244286
Ensembl Transcript ID: ENST00000495917
Location (hg19): chr3:124500002-124506604
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 460 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000495917.1; ITGB5-AS1-001; OTTHUMT00000356215.1; NONHSAT091572
Alternative gene names: ENSG00000244286.1; ITGB5-AS1; OTTHUMG00000159559.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -216.0622 non-coding 
CPAT coding probability 2.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ITGB5-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UMPS-1:1
4.0 ITGB5-AS1:1
4.1 ITGB5-AS1:1
5.0 ITGB5-AS1:1
5.1 ITGB5-AS1:1
5.2 ITGB5-AS1:1