Transcript: KCNIP4-IT1:2

Basic information

LNCipedia transcript ID: KCNIP4-IT1:2 
HGNC Gene Symbol: KCNIP4-IT1    
HGNC Full Gene Name: KCNIP4 intronic transcript 1
Ensembl Gene ID: ENSG00000280650
Ensembl Transcript ID: ENST00000627566
RefSeq ID: NR_002813
Location (hg19): chr4:21844964-21854811
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 9848 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT095745; NR_002813; ENST00000627566.1; NR_002813.1
Alternative gene names: ENSG00000280650.1; KCNIP4-IT1; UM9-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.0819 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KCNIP4-IT1:2 yes no no no

Available literature

  1. Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
  2. Shen (2015), Exploration of Deregulated Long Non-Coding RNAs in Association with Hepatocarcinogenesis and Survival., Cancers (Basel)
  3. He (2013), ANRIL/CDKN2B-AS shows two-stage clade-specific evolution and becomes conserved after transposon insertions in simians., BMC Evol. Biol.
  4. Michel (2002), UM 9(5)h and UM 9(5)p, human and porcine noncoding transcripts with preferential expression in the cerebellum., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPR125-2:2
4.0 KCNIP4-IT1:2
4.1 KCNIP4-IT1:2
5.0 KCNIP4-IT1:2
5.1 KCNIP4-IT1:2
5.2 KCNIP4-IT1:2