Transcript: KCNIP4-IT1:3

Basic information

LNCipedia transcript ID: KCNIP4-IT1:3 
LNCipedia gene ID: KCNIP4-IT1
Location (hg19): chr4:21846984-21849319
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2336 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT095746
Alternative gene names: UM9-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.5212 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KCNIP4-IT1:3 yes no no no

Available literature

  1. Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
  2. Shen (2015), Exploration of Deregulated Long Non-Coding RNAs in Association with Hepatocarcinogenesis and Survival., Cancers (Basel)
  3. He (2013), ANRIL/CDKN2B-AS shows two-stage clade-specific evolution and becomes conserved after transposon insertions in simians., BMC Evol. Biol.
  4. Michel (2002), UM 9(5)h and UM 9(5)p, human and porcine noncoding transcripts with preferential expression in the cerebellum., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPR125-2:3
4.0 KCNIP4-IT1:3
4.1 KCNIP4-IT1:3
5.0 KCNIP4-IT1:3
5.1 KCNIP4-IT1:3
5.2 KCNIP4-IT1:3